Download MendeleyStructure of bacteriophage K gp155
Pichel, A., van Raaij, M.J.To be published.
9F49 | pdb_00009f49
Structure of the bacteriophage K gp155 C-terminal domain, seleno-methionine modified version
- PDB DOI: https://doi.org/10.2210/pdb9F49/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Staphylococcus phage K
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2024-04-26 Released: 2025-05-14
- Funding Organization(s): Agencia Estatal de Investigacion (AEI)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.62 Å
- R-Value Free: 0.184 (Depositor), 0.183 (DCC)
- R-Value Work: 0.158 (Depositor), 0.158 (DCC)
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GP-PDE domain-containing protein | A [auth AAA] | 235 | Staphylococcus phage K | Mutation(s): 0 Gene Names: 812_115, 812a_115, 812F1_115, K1/420_115, K1_115 |  |
UniProt | |||||
Find proteins for A0A0U1WFD7 (Staphylococcus phage 812) Explore A0A0U1WFD7 Go to UniProtKB: A0A0U1WFD7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0U1WFD7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| G3P (Subject of Investigation/LOI) Query on G3P | B [auth AAA] | SN-GLYCEROL-3-PHOSPHATE C3 H9 O6 P AWUCVROLDVIAJX-GSVOUGTGSA-N |  | ||
| PO4 Query on PO4 | D [auth AAA], E [auth AAA] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| CA Query on CA | C [auth AAA] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A [auth AAA] | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.62 Å
- R-Value Free: 0.184 (Depositor), 0.183 (DCC)
- R-Value Work: 0.158 (Depositor), 0.158 (DCC)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 42.397 | α = 90 |
| b = 42.861 | β = 90 |
| c = 123.646 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| CRANK2 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-05-14 Deposition Author(s): Pichel, A., van Raaij, M.J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Agencia Estatal de Investigacion (AEI) | Spain | BFU2014-53425-P |
| Agencia Estatal de Investigacion (AEI) | Spain | BFU2017-82207-P |
| Agencia Estatal de Investigacion (AEI) | Spain | PID2021-125597NB-I00 |
Revision History (Full details and data files)
- Version 1.0: 2025-05-14
Type: Initial release
