XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 6T8E designated by the RCSB
Best-fitted instance in this entry | |
Other instances in this entry |
Best-fitted instance in this entry | |
Best-fitted PDB instances with same target (top 5) |
Best-fitted instance in this entry | |
Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
---|---|---|---|---|---|---|---|---|---|---|---|---|
6T8E_XYP_D_504 | 52% | 55% | 0.106 | 0.861 | 0.55 | 1.17 | - | 2 | 0 | 0 | 100% | 1 |
6T8E_XYP_A_504 | 46% | 48% | 0.127 | 0.86 | 0.65 | 1.33 | - | 2 | 0 | 0 | 100% | 1 |
6T8E_XYP_C_504 | 44% | 54% | 0.116 | 0.842 | 0.66 | 1.12 | - | 1 | 0 | 0 | 100% | 1 |
6T8E_XYP_B_504 | 34% | 53% | 0.13 | 0.813 | 0.61 | 1.18 | - | 1 | 0 | 0 | 100% | 1 |
6T8E_XYP_D_508 | 31% | 51% | 0.148 | 0.815 | 0.44 | 1.42 | - | 2 | 0 | 0 | 100% | 1 |
6T8E_XYP_B_508 | 26% | 31% | 0.161 | 0.802 | 0.57 | 2.11 | - | 5 | 0 | 0 | 100% | 1 |
6T8E_XYP_D_507 | 21% | 53% | 0.153 | 0.758 | 0.42 | 1.38 | - | 2 | 0 | 0 | 100% | 1 |
5NH7_XYP_A_504 | 45% | 53% | 0.174 | 0.905 | 0.68 | 1.14 | - | 1 | 0 | 0 | 100% | 1 |
5NH9_XYP_A_504 | 41% | 54% | 0.161 | 0.877 | 0.68 | 1.07 | - | - | 0 | 0 | 100% | 1 |
5NH8_XYP_A_504 | 37% | 61% | 0.19 | 0.887 | 0.56 | 0.93 | - | - | 0 | 0 | 100% | 1 |
5NHE_XYP_A_504 | 34% | 55% | 0.196 | 0.88 | 0.42 | 1.3 | - | 2 | 0 | 0 | 100% | 1 |
5NHD_XYP_A_504 | 27% | 54% | 0.216 | 0.861 | 0.58 | 1.18 | - | 1 | 0 | 0 | 100% | 1 |
1OD8_XYP_A_1311 | 100% | 64% | 0.047 | 0.992 | 0.75 | 0.64 | - | - | 0 | 0 | 100% | 1 |
1V0M_XYP_A_1304 | 100% | 71% | 0.035 | 0.993 | 0.82 | 0.33 | - | - | 0 | 0 | 90% | 1 |
8Y00_XYP_D_201 | 99% | 28% | 0.032 | 0.986 | 0.63 | 2.19 | - | 7 | 1 | 0 | 90% | 1 |
2WYS_XYP_A_1001 | 99% | 38% | 0.052 | 0.983 | 0.69 | 1.7 | - | 4 | 3 | 0 | 100% | 1 |
4PMY_XYP_A_401 | 99% | 73% | 0.051 | 0.979 | 0.49 | 0.57 | - | - | 0 | 0 | 100% | 1 |