3TDK | pdb_00003tdk


UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE

UPG is a Ligand Of Interest in 3TDK designated by the RCSB
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Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3TDK_UPG_B_501 62% 6% 0.181 0.9752.59 2.37 7 1670100%1
3TDK_UPG_H_501 59% 7% 0.191 0.9762.55 2.24 7 14110100%1
3TDK_UPG_D_501 58% 29% 0.194 0.9750.97 1.85 2 1150100%1
3TDK_UPG_L_501 58% 31% 0.179 0.9581 1.74 2 1050100%1
3TDK_UPG_C_501 58% 9% 0.193 0.9722.55 2.01 7 1380100%1
3TDK_UPG_E_501 57% 28% 0.192 0.9671.06 1.83 5 970100%1
3TDK_UPG_K_501 56% 4% 0.175 0.9493.21 2.41 10 11150100%1
3TDK_UPG_J_501 56% 23% 0.2 0.9741.33 1.83 3 1260100%1
3TDK_UPG_G_501 56% 6% 0.195 0.9682.52 2.55 8 1680100%1
3TDK_UPG_A_501 52% 6% 0.21 0.9692.55 2.47 9 13100100%1
3TDK_UPG_I_501 52% 8% 0.202 0.962.61 2.09 8 1530100%1
3TDK_UPG_F_501 46% 27% 0.212 0.9471.03 1.88 1 1260100%1
2Q3E_UPG_A_501 98% 41% 0.054 0.9791.04 1.24 1 920100%1
6C5Z_UPG_F_501 97% 35% 0.059 0.9711.2 1.35 2 620100%1
3KHU_UPG_E_502 86% 33% 0.096 0.9641.15 1.5 4 900100%1
4EDF_UPG_B_501 85% 41% 0.101 0.9680.9 1.37 2 500100%1
6C5A_UPG_F_502 79% 34% 0.133 0.981.19 1.4 3 620100%1
3JSZ_UPG_A_526 100% 39% 0.042 0.9830.94 1.41 1 500100%1
3SRZ_UPG_A_556 99% 34% 0.049 0.981.04 1.54 3 830100%1
8UAG_UPG_A_504 99% 5% 0.049 0.9783.87 1.44 16 500100%1
6K0I_UPG_A_402 98% 27% 0.057 0.981.31 1.63 5 1120100%1
1EK6_UPG_A_401 98% 48% 0.061 0.9820.89 1.12 - 310100%1